Mir-23-P2

MirGeneDB ID

Mun-Mir-23-P2

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-23-P3e Mun-Mir-23-P3f

Orthologues

Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Dre-Mir-23-P2a Dre-Mir-23-P2b Ete-Mir-23-P2 Gga-Mir-23-P2 Gja-Mir-23-P2 Gmo-Mir-23-P2b Hsa-Mir-23-P2 Lch-Mir-23-P2 Loc-Mir-23-P2 Mal-Mir-23-P2a Mal-Mir-23-P2b Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmu-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Spt-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Tni-Mir-23-P2b Xla-Mir-23-P2c Xla-Mir-23-P2d Xtr-Mir-23-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Mun_miRNA_loci)

23-P2_LR594633.1:206443096-206443237: 42-101 [-]

Precursor
(pre-Mir +30nt flank)

UCUUCGUCGCCCAUAAUGCUGUGGCUGCUUGGGUUCCUGGCAUGCUGAUUUGUGACUUAAGAUUAAAAUCACAUUGCCAGGGAUUACCACACAGCCAUGGCUGAGACUAUCACCCCUCAU

Get precursor sequence

Structure

        10          20        30          40         50        
UCUUCGUCGCCCAUAAU--          CU   --         -|  C      GUGACU 
                   GCUGUGGCUG  UGG  GUUCCUGGC AUG UGAUUU      U
                   CGGUACCGAC  ACC  UAGGGACCG UAC ACUAAA      A
UACUCCCCACUAUCAGAGU          AC   AU         U^  -      AUUAGA 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

To

Star sequence

Mun-Mir-23-P2_5p*

mirBase accession

None

Sequence

0- GGGUUCCUGGCAUGCUGAUUU -21

Get sequence

Mature sequence

Mun-Mir-23-P2_3p

mirBase accession

None

Sequence

37- AUCACAUUGCCAGGGAUUACCAC -60

Get sequence