MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-130-P1b

Family name MIR-130 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-130a
Paralogues Cli-Mir-130-P1a  Cli-Mir-130-P2a  Cli-Mir-130-P2b  Cli-Mir-130-P3a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold580: 630675-630737 [+]
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P1b scaffold580: 630675-630737 [+]
Mir-130-P2b scaffold580: 631257-631318 [+]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UAAAUUUUCUUCGAGUGGUGUCUGUCCAGUGCCCUUUUUAUGUUGUACUACUGGUGAUCAUGCACAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGCAAUGCUAUCGACGUUAUUAUUA
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Structure
        10           20        30        40        50        60 
UAAAUUUUCUUCGAGUGG---| U   U             U          A  GGUGAUCA 
                     UG CUG CCAGUGCCCUUUU AUGUUGUACU CU        \
                     AC GAC GGUUACGGGAAAA UGUAACGUGA GA        U
AUUAUUAUUGCAGCUAUCGUA^ -   C             U          C  AAAACACG 
 120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-130-P1b_5p*
mirBase accessionMIMAT0038505
Sequence 
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Cli-Mir-130-P1b_3p
mirBase accessionMIMAT0038506
Sequence 
41- CAGUGCAAUGUUAAAAGGGCAU -63
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