MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-130-P1b

Family name MIR-130 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-130c
Paralogues Gga-Mir-130-P1a  Gga-Mir-130-P2a  Gga-Mir-130-P2b  Gga-Mir-130-P3a  Gga-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 19: 7340157-7340217 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P2b 19: 7339868-7339929 [-] UCSC Ensembl
Mir-130-P1b 19: 7340157-7340217 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
GCCUGCUCCAUUGAGCGGUGUCUGUCCAGCGCCCUUUUUAUGUUGUACUACUAGUGAUCAUACACAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGCAGUGCUGUCUGCAGUGCUCCCU
Get precursor sequence
Structure
        10           20        30        40        50          
GCCUGCUCCAUUGAGCGG---| U   U    C        U          A  AGUGAUC 
                     UG CUG CCAG GCCCUUUU AUGUUGUACU CU       \
                     AC GAC GGUU CGGGAAAA UGUAACGUGA GA       A
UCCCUCGUGACGUCUGUCGUG^ -   C    A        U          C  AACACAU 
 .       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-130-P1b_5p*
mirBase accessionMIMAT0007733
Sequence 
0- GCCCUUUUUAUGUUGUACUACU -22
Get sequence
Proposed targets TargetScanVert: gga-miR-130c-5p
miRDB: MIMAT0007733
Mature sequence

Gga-Mir-130-P1b_3p
mirBase accessionMIMAT0007734
Sequence 
39- CAGUGCAAUGUUAAAAGGGCAU -61
Get sequence
Proposed targets TargetScanVert: gga-miR-130c-3p
miRDB: MIMAT0007734