MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-301a
Paralogues Gga-Mir-130-P1a  Gga-Mir-130-P1b  Gga-Mir-130-P2b  Gga-Mir-130-P3a  Gga-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
15: 702346-702408 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)
Mir-130-P4a 15: 694747-694807 [-] UCSC Ensembl
Mir-130-P3a 15: 695881-695944 [-] UCSC Ensembl
Mir-130-P2a 15: 702346-702408 [-] UCSC Ensembl
Mir-130-P1a 15: 703569-703627 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAAGUGACAGUGGCUGCUGGUAUCGCUGGCUCUGACAAUGUUGCACUACUGUCUGCACAAAUAAAGCAGUGCAAUAAUAUUGUCAAAGCAUUUGGUUCCAGUCCUUAUACAUCCUCAUGAU
Get precursor sequence
Structure
        10          20        30        40           50         
CAGAAGUGACAGUGGCU--     U    CUG   C         ---|     A  GUCUGC 
                   GCUGG AUCG   GCU UGACAAUGU   UGCACU CU      A
                   UGACC UGGU   CGA ACUGUUAUA   ACGUGA GA      C
UAGUACUCCUACAUAUUCC     U    UUA   A         AUA^     C  AAUAAA 
 120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-130-P2a_5p*

mirBase accessionMIMAT0026531
Sequence
0- GCUCUGACAAUGUUGCACUACU -22
Get sequence
Proposed targets TargetScanVert: gga-miR-301a-5p
miRDB: MIMAT0026531
Mature sequence

Gga-Mir-130-P2a_3p

mirBase accessionMIMAT0001166
Sequence
38- CAGUGCAAUAAUAUUGUCAAAGCAU -63
Get sequence
Proposed targets TargetScanVert: gga-miR-301a-3p
miRDB: MIMAT0001166