MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1a  Lch-Mir-130-P1b  Lch-Mir-130-P1c  Lch-Mir-130-P1d  Lch-Mir-130-P2b  Lch-Mir-130-P2d  Lch-Mir-130-P3a  Lch-Mir-130-P3b  Lch-Mir-130-P3c  Lch-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126620.1: 804317-804379 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUUGUAACAAUGCGUGCUGGUGUCAGCUGCUCUGACAGUGUUGCACUACUGUAUACACAAGUUAAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGGGCCCAGUUCAAACACCCUCCUGCUUA
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Structure
        10          20        30        40           50         
ACUUUGUAACAAUGCGU--     UG    C    C       ---|       A  GUAUAC 
                   GCUGG  UCAG UGCU UGACAGU   GUUGCACU CU      A
                   UGACC  GGUC ACGA ACUGUUA   UAACGUGA GA      C
AUUCGUCCUCCCACAAACU     CG    U    A       UGA^       C  AUUGAA 
 120       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Lch-Mir-130-P2a_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUCUGACAGUGUUGCACUACU -22
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Mature sequence

Lch-Mir-130-P2a_3p (predicted)

mirBase accessionNone
Sequence
38- CAGUGCAAUAGUAUUGUCAAAGCAU -63
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