| MirGeneDB ID | Lch-Mir-130-P2a |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126620.1: 804317-804379 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P2a) |
Mir-130-P4a
JH126620.1: 792824-792880 [-]
Ensembl
Mir-130-P3a JH126620.1: 795127-795190 [-] Ensembl Mir-130-P2a JH126620.1: 804317-804379 [-] Ensembl Mir-130-P1a JH126620.1: 806769-806827 [-] Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
ACUUUGUAACAAUGCGUGCUGGUGUCAGCUGCUCUGACAGUGUUGCACUACUGUAUACACAAGUUAAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGGGCCCAGUUCAAACACCCUCCUGCUUAGet precursor sequence |
| Structure | 10 20 30 40 50 ACUUUGUAACAAUGCGU-- UG C C ---| A GUAUAC GCUGG UCAG UGCU UGACAGU GUUGCACU CU A UGACC GGUC ACGA ACUGUUA UAACGUGA GA C AUUCGUCCUCCCACAAACU CG U A UGA^ C AUUGAA 120 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Lch-Mir-130-P2a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCUCUGACAGUGUUGCACUACU -22
Get sequence
|
| Mature sequence | Lch-Mir-130-P2a_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- CAGUGCAAUAGUAUUGUCAAAGCAU -63
Get sequence
|
