| MirGeneDB ID | Lch-Mir-130-P3c |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P4a |
| Orthologues | Sto-Mir-130-P3c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH130223.1: 57514-57577 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P3c) |
Mir-130-P1c
JH130223.1: 57005-57064 [+]
Ensembl
Mir-130-P3c JH130223.1: 57514-57577 [+] Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
UGUCCAAGGUUACCUGUCCUGUAGGCUGGCACCCUAUCAAUAUUGCCUCUGCUUACUUCAAAGUGUCAGUAGUGCAAUGUUGCUUAUAGGGUUUUGGAAUGCAGUGAGGCGUCCCAACCAGGUCGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGUCCAAGGUUACCUGUC-- GG UG C ---| CU UACUUC CUGUA C G ACCCUAU CAAUAUUGC CUGCU A GACGU G U UGGGAUA GUUGUAACG GAUGA A CUGGACCAACCCUGCGGAGU AA GU U UUC^ U- CUGUGA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-130-P3c_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCCUAUCAAUAUUGCCUCUGCU -23
Get sequence
|
| Mature sequence | Lch-Mir-130-P3c_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UAGUGCAAUGUUGCUUAUAGGGUUU -64
Get sequence
|
