| MirGeneDB ID | Lch-Mir-130-P1c |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P1c Ami-Mir-130-P1c Bta-Mir-130-P1c Cfa-Mir-130-P1c Cja-Mir-130-P1c Cpi-Mir-130-P1c Cpo-Mir-130-P1c Dno-Mir-130-P1c Eca-Mir-130-P1c Ete-Mir-130-P1c Gja-Mir-130-P1c Hsa-Mir-130-P1c Laf-Mir-130-P1c Mdo-Mir-130-P1c Mml-Mir-130-P1c Mmr-Mir-130-P1c Mmu-Mir-130-P1c Mun-Mir-130-P1c Neu-Mir-130-P1c Oan-Mir-130-P1c Ocu-Mir-130-P1c Pab-Mir-130-P1c Pbv-Mir-130-P1c Rno-Mir-130-P1c Sha-Mir-130-P1c Spt-Mir-130-P1c Sto-Mir-130-P1c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH130223.1: 57005-57064 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P1c) |
Mir-130-P1c
JH130223.1: 57005-57064 [+]
Ensembl
Mir-130-P3c JH130223.1: 57514-57577 [+] Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
CGGUGACUUUGUGUAUUUGUGUUGUCUGAAGCCCUUUUCACAUUGUACUACUGUAUGCUAUCCAAAGGCAGUGCAAUAUCAAAAGGGCAUUAGCCAUCCUCUUCCUCUCAUCACUUGUGGGet precursor sequence |
| Structure | 10 20 30 40 50 CGGUGACUUUGUGUAUUUGUGU-- U A CAC A-| GUAUGC UG CUGA GCCCUUUU AUUGUACU CU \ AC GAUU CGGGAAAA UAACGUGA GA U GGUGUUCACUACUCUCCUUCUCCU C A CUA CG^ AACCUA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Lch-Mir-130-P1c_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCCCUUUUCACAUUGUACUACU -22
Get sequence
|
| Mature sequence | Lch-Mir-130-P1c_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- CAGUGCAAUAUCAAAAGGGCAU -60
Get sequence
|
