Mir-130-P1c

MirGeneDB ID

Bta-Mir-130-P1c

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-130a

Paralogues

Bta-Mir-130-P2a Bta-Mir-130-P2b Bta-Mir-130-P3b Bta-Mir-130-P4a

Orthologues

Aca-Mir-130-P1c Ami-Mir-130-P1c Cfa-Mir-130-P1c Cpi-Mir-130-P1c Cpo-Mir-130-P1c Dno-Mir-130-P1c Ete-Mir-130-P1c Gja-Mir-130-P1c Hsa-Mir-130-P1c Lch-Mir-130-P1c Mdo-Mir-130-P1c Mml-Mir-130-P1c Mmu-Mir-130-P1c Mun-Mir-130-P1c Oan-Mir-130-P1c Ocu-Mir-130-P1c Pbv-Mir-130-P1c Rno-Mir-130-P1c Sha-Mir-130-P1c Spt-Mir-130-P1c Sto-Mir-130-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037342.1: 80888267-80888328 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGGCCGGCGCCCCUCUGCUGCGGGCCGGAGCUCUUUUCACAUUGUGCUACUGUCUGCGCCUGUCACUAGCAGUGCAAUGUUAAAAGGGCAUUGGCUGUGCAGCGCUACCCAGCGCCGGCUG

Get precursor sequence

Structure

        10         20         30        40        50        60
AGGGCCGGCGCCCCUCU-      -|     A        C      UG  A  GUCUGCG 
                  GCUGCG GGCCGG GCUCUUUU ACAUUG  CU CU       C
                  CGACGU UCGGUU CGGGAAAA UGUAAC  GA GA       C
GUCGGCCGCGACCCAUCG      G^     A        U      GU  C  UCACUGU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

The post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' moR reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.

3' NTU

Yes

Motifs

UG at 5p(-14)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-130-P1c_5p*

mirBase accession

None

Sequence

0- GCUCUUUUCACAUUGUGCUACU -22

Get sequence

Mature sequence

Bta-Mir-130-P1c_3p

mirBase accession

MIMAT0009223

Sequence

40- CAGUGCAAUGUUAAAAGGGCAU -62

Get sequence

Proposed targets

TargetScanVert: bta-miR-130a