Mir-130-P1c

MirGeneDB ID

Laf-Mir-130-P1c

Family name

MIR-130 (all species)

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Laf-Mir-130-P2a Laf-Mir-130-P2b Laf-Mir-130-P3b Laf-Mir-130-P4a

Orthologues

Aca-Mir-130-P1c Ami-Mir-130-P1c Bta-Mir-130-P1c Cfa-Mir-130-P1c Cja-Mir-130-P1c Cpi-Mir-130-P1c Cpo-Mir-130-P1c Dno-Mir-130-P1c Eca-Mir-130-P1c Ete-Mir-130-P1c Gja-Mir-130-P1c Hsa-Mir-130-P1c Lch-Mir-130-P1c Mdo-Mir-130-P1c Mml-Mir-130-P1c Mmr-Mir-130-P1c Mmu-Mir-130-P1c Mun-Mir-130-P1c Neu-Mir-130-P1c Oan-Mir-130-P1c Ocu-Mir-130-P1c Pab-Mir-130-P1c Pbv-Mir-130-P1c Rno-Mir-130-P1c Sha-Mir-130-P1c Spt-Mir-130-P1c Sto-Mir-130-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010142.1: 1425421-1425482 [+] UCSC Ensembl

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

GCAGAGCCAGCGCCUCUGCUGCUGGCCAGAGCUCUUUUCACAUUGUGCUACUGUCUGCACCUAUCACUAGCAGUGCAAUGUUAAAAGGGCAUUGGCCGGGUAGUGCUACCCAGCGUUGGCUG

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Structure

        10         20         30        40        50        60
GCAGAGCCAGCGCCUCU-    -|       A        C      UG  A  GUCUGCA 
                  GCUG CUGGCCAG GCUCUUUU ACAUUG  CU CU       C
                  UGAU GGCCGGUU CGGGAAAA UGUAAC  GA GA       C
GUCGGUUGCGACCCAUCG    G^       A        U      GU  C  UCACUAU 
120       110       100        90        80        70

Deep sequencing

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Comment

The post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' DcRNA reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.

3' NTU

Yes

Motifs

UG at 5p(-14)

Tissue expression

Wh

Star sequence

Laf-Mir-130-P1c_5p*

mirBase accession

None

Sequence

0- GCUCUUUUCACAUUGUGCUACU -22

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Mature sequence

Laf-Mir-130-P1c_3p

mirBase accession

None

Sequence

40- CAGUGCAAUGUUAAAAGGGCAU -62

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