MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-130-P1c

Family name MIR-130 (all species)
Seed AAUGCAA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-130a
Paralogues Ami-Mir-130-P1a  Ami-Mir-130-P1b  Ami-Mir-130-P2a  Ami-Mir-130-P2b  Ami-Mir-130-P3a 
Orthologues Aca-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017709282.1: 610407-610468 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAGCCCAUCCCUGCCAGGCCCCUGUCCAAGGCUCUUUUCACAUUGUACUACUGUAUGAGCCCCUGCCAAGCAAUGCAAUGUAAAAAGGGCAUUGGGUAGGUGGUCCCCACCAUGCCCACCCA
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Structure
        10         20         30        40        50        60
GAGCCCAUCCCUGCCAG-   -|  GU    G        C        CUA  GUAUGAG 
                  GCC CCU  CCAA GCUCUUUU ACAUUGUA   CU       C
                  UGG GGA  GGUU CGGGAAAA UGUAACGU   GA       C
ACCCACCCGUACCACCCC   U^  UG    A        A        AAC  ACCGUCC 
120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-130-P1c_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUCUUUUCACAUUGUACUACU -22
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Mature sequence

Ami-Mir-130-P1c_3p (predicted)

mirBase accessionMIMAT0038140
Sequence
40- CAAUGCAAUGUAAAAAGGGCAU -62
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