MirGeneDB 2.1
MirGeneDB ID

Aca-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-130a-1
Paralogues Aca-Mir-130-P1a  Aca-Mir-130-P1b  Aca-Mir-130-P2a  Aca-Mir-130-P2b  Aca-Mir-130-P3a  Aca-Mir-130-P4a 
Orthologues Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)		 1: 91616120-91616181 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGUGCACUGUGCAUGGCCCCUGUCCAAGGCUCUUUUCACAUUGUGCUUCUGUCUGUGCCCGACCCAAGCAGUGCAAUGUUAAAAGGGCAUUGGGUGGGUGGCUGCAGCAGCAUGAAGCCU
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Structure
        10         20         30        40        50        60
CAAGUGCACUGUGCAUG-   -| UG     G        C      UG  U  GUCUGUG 
                  GCC CC  UCCAA GCUCUUUU ACAUUG  CU CU       C
                  CGG GG  GGGUU CGGGAAAA UGUAAC  GA GA       C
UCCGAAGUACGACGACGU   U^ GU     A        U      GU  C  ACCCAGC 
120       110       100        90        80        70
Deep sequencing
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CommentThe post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' moR reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sk To Wh
Star sequence

Aca-Mir-130-P1c_5p*
mirBase accessionMIMAT0021739
Sequence 
0- GCUCUUUUCACAUUGUGCUUCU -22
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Mature sequence

Aca-Mir-130-P1c_3p
mirBase accessionMIMAT0021740
Sequence 
40- CAGUGCAAUGUUAAAAGGGCAU -62
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