Mir-130-P1b

MirGeneDB ID

Aca-Mir-130-P1b

Family name

MIR-130 (all species)

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-130a-2

Paralogues

Aca-Mir-130-P1a Aca-Mir-130-P1c Aca-Mir-130-P2a Aca-Mir-130-P2b Aca-Mir-130-P3a Aca-Mir-130-P4a

Orthologues

Ami-Mir-130-P1b Cli-Mir-130-P1b Cmi-Mir-130-P1b Cpi-Mir-130-P1b Dre-Mir-130-P1b1 Gga-Mir-130-P1b Gja-Mir-130-P1b Lch-Mir-130-P1b Loc-Mir-130-P1b Mdo-Mir-130-P1b Mun-Mir-130-P1b Oan-Mir-130-P1b Pbv-Mir-130-P1b Sha-Mir-130-P1b Spt-Mir-130-P1b Sto-Mir-130-P1b Tgu-Mir-130-P1b Xla-Mir-130-P1b3 Xla-Mir-130-P1b4 Xtr-Mir-130-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

GL343684.1: 340820-340882 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P1b)

Mir-130-P2b GL343684.1: 336512-336573 [-] UCSC Ensembl
Mir-130-P1b GL343684.1: 340820-340882 [-] UCSC Ensembl

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

CUUCCAGAUGGCACGAGGUGUCUGUCCACUGCCCUUUUUAUGUUGUACUACUAGUGAACAUGCGCAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGCAAUGCUCAGUCGACUGAAAUCC

Get precursor sequence

Structure

        10           20        30        40        50        60 
CUUCCAGAUGGCACGAGG---| U   U   C         U          A  AGUGAACA 
                     UG CUG CCA UGCCCUUUU AUGUUGUACU CU        \
                     AC GAC GGU ACGGGAAAA UGUAACGUGA GA        U
CCUAAAGUCAGCUGACUCGUA^ -   C   U         U          C  AAAACGCG 
 120       110        100        90        80        70