MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-130-P1b3

Family name MIR-130 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-130a
Paralogues Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xla-Mir-130-P1b4  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xtr-Mir-130-P1b 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 93401048-93401112 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b3)		 Mir-130-P1b3 NC_030726.1: 93401048-93401112 [+] UCSC Ensembl
Mir-130-P2b3 NC_030726.1: 93401257-93401319 [+] UCSC Ensembl
Mir-130-P2b4 NC_030726.1: 93401258-93401319 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
AACUAGUUUAAUCCUAUGAGCCUGUCCAGUGCCCUUUUUAUGUUGUACUACUAGUGGUCACACACAAAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGGGCCACUGACCUCAUUCUUACUG
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Structure
        10        20          30        40        50        60  
AACUAGUUUAAUCCUAUGAG--|   U             U          A  AGUGGUCAC 
                      CCUG CCAGUGCCCUUUU AUGUUGUACU CU         \
                      GGAC GGUUACGGGAAAA UGUAACGUGA GA         A
GUCAUUCUUACUCCAGUCACCG^   C             U          C  AAAAAACAC 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Em
Star sequence

Xla-Mir-130-P1b3_5p*
mirBase accessionMIMAT0046441
Sequence 
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Xla-Mir-130-P1b3_3p
mirBase accessionMIMAT0046442
Sequence 
43- CAGUGCAAUGUUAAAAGGGCAU -65
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