MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-130-P2b3

Family name MIR-130 (all species)
Seed AGUGCAA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-301-1
Paralogues Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xla-Mir-130-P2b4  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xtr-Mir-130-P2b 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030726.1: 93401257-93401319 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2b3)
Mir-130-P1b3 NC_030726.1: 93401048-93401112 [+] UCSC Ensembl
Mir-130-P2b3 NC_030726.1: 93401257-93401319 [+] UCSC Ensembl
Mir-130-P2b4 NC_030726.1: 93401258-93401319 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGAAUUGGAAGCUUGUUCUGCUAAUGUGUGCUCUGACUUUAUUGCACUACUGUACUAUACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGCUAGCAGAAGAUCCUCACAUAACAAGC
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Structure
        10         20        30        40           50          
UCUGAAUUGGAAGCUUG-        AU U     C    U---|         A  GUACUA 
                  UUCUGCUA  G GUGCU UGAC    UUAUUGCACU CU      \
                  AAGACGAU  U UACGA ACUG    GAUAACGUGA GA      U
CGAACAAUACACUCCUAG        CG C     A    UUAU^         C  UCGACA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-130-P2b3_5p*

mirBase accessionMIMAT0046566
Sequence
0- UGCUCUGACUUUAUUGCACUACU -23
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Mature sequence

Xla-Mir-130-P2b3_3p

mirBase accessionMIMAT0046567
Sequence
38- CAGUGCAAUAGUAUUGUCAAAGCAU -63
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