MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-130-P1a  Cmi-Mir-130-P1b  Cmi-Mir-130-P2a  Cmi-Mir-130-P3a  Cmi-Mir-130-P3b  Cmi-Mir-130-P4a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cli-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xtr-Mir-130-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI636009.1: 739328-739389 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGCUUUGCCUGACCAGCUGCUGACAGACGCUCUGACUUUAUUGCACUACUGUGUUUCACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGGAGGUUGCUCAGAUCGCCAUUGGAGAG
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Structure
        10          20        30           40        50         
GAAGCUUUGCCUGACCA--  U   GA    C   C    U---|         A  GUGUUU 
                   GC GCU  CAGA GCU UGAC    UUAUUGCACU CU      \
                   CG UGG  GUCU CGA ACUG    GAUAACGUGA GA      C
GAGAGGUUACCGCUAGACU  U   AG    A   A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Star sequence

Cmi-Mir-130-P2b_5p*

mirBase accessionNone
Sequence
0- GCUCUGACUUUAUUGCACUACU -22
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Mature sequence

Cmi-Mir-130-P2b_3p

mirBase accessionNone
Sequence
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
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