MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-301-1
Paralogues Xtr-Mir-130-P1a  Xtr-Mir-130-P1b  Xtr-Mir-130-P2a  Xtr-Mir-130-P3a  Xtr-Mir-130-P4a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 91417661-91417722 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2b)
Mir-130-P1b chr2: 91417449-91417513 [+] UCSC Ensembl
Mir-130-P2b chr2: 91417661-91417722 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUUUUGGGAGCUUGUUCUGCUAAUGUGUGCUCUGACUUUAUUGCACUACUGUACUAUACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGCAAGCAGAAGAUCCUCACAUAACAAGC
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Structure
        10          20          30           40        50         
UGAUUUUGGGAGCUUGU--      AA   --     C    U---|         A  GUACUA 
                   UCUGCU  UGU  GUGCU UGAC    UUAUUGCACU CU      \
                   AGACGA  ACG  UACGA ACUG    GAUAACGUGA GA      U
CGAACAAUACACUCCUAGA      --   UC     A    UUAU^         C  UCGACA 
120       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-130-P2b_5p*

mirBase accessionNone
Sequence
0- GCUCUGACUUUAUUGCACUACU -22
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Mature sequence

Xtr-Mir-130-P2b_3p

mirBase accessionMIMAT0003635
Sequence
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
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Proposed targets TargetScanVert: xtr-miR-301