MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-130-P2b1

Family name MIR-130 (all species)
Seed AGUGCAA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-301a
Paralogues Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Dre-Mir-130-P1b1  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Dre-Mir-130-P3a1  Dre-Mir-130-P3b1  Dre-Mir-130-P4a1 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xtr-Mir-130-P2b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr10: 33377012-33377073 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2b1)
Mir-130-P3b1 chr10: 33376841-33376905 [-] UCSC Ensembl
Mir-130-P2b1 chr10: 33377012-33377073 [-] UCSC Ensembl
Mir-130-P1b1 chr10: 33377140-33377202 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGCCGGUCCUCAAGUGCUGUUAACAGGUGCUCUGACUUCAUUGCACUACUGUAUUGGACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCGUCUGAGAGCAGCUUUGCACGGUGUGUUUGAA
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Structure
        10          20        30        40           50         
GUGGCCGGUCCUCAAGU--      AA   GU   C    UUC---|       A  GUAUUG 
                   GCUGUU  CAG  GCU UGAC      AUUGCACU CU      \
                   CGACGA  GUC  CGA ACUG      UAACGUGA GA      G
AAGUUUGUGUGGCACGUUU      GA   UG   A    UUAUGA^       C  UCGACA 
120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-130-P2b1_5p*

mirBase accessionNone
Sequence
0- GCUCUGACUUCAUUGCACUACU -22
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Mature sequence

Dre-Mir-130-P2b1_3p

mirBase accessionMIMAT0001870
Sequence
37- CAGUGCAAUAGUAUUGUCAAAGCGU -62
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Proposed targets TargetScanFish: dre-miR-301a