| MirGeneDB ID | Lch-Mir-130-P2b |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cja-Mir-130-P2b Cli-Mir-130-P2b Cmi-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Dre-Mir-130-P2b1 Eca-Mir-130-P2b Ete-Mir-130-P2b Gga-Mir-130-P2b Gja-Mir-130-P2b Gmo-Mir-130-P2b1 Hsa-Mir-130-P2b Laf-Mir-130-P2b Loc-Mir-130-P2b Mal-Mir-130-P2b2 Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmr-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pab-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Sto-Mir-130-P2b Tgu-Mir-130-P2b Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xtr-Mir-130-P2b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126567.1: 194120-194181 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P2b) |
Mir-130-P3b
JH126567.1: 190727-190791 [-]
Ensembl
Mir-130-P2b JH126567.1: 194120-194181 [-] Ensembl Mir-130-P1b JH126567.1: 194546-194608 [-] Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
CAAUCUUAAGAAGUCUUGCUGCUGAUGGGUGCUCUGACUUUAUUGCACUACUGUGGUUUACAUCAAGCAGUGCAAUAGUAUUGUCAAAGCAUCUAAAAGCAGAUAGCACAACAAGGCCUUCAGet precursor sequence |
| Structure | 10 20 30 40 50 CAAUCUUAAGAAGUCUUG-- GA C U---| A GUGGUU CUGCU UGGGUGCU UGAC UUAUUGCACU CU \ GACGA AUCUACGA ACUG GAUAACGUGA GA U ACUUCCGGAACAACACGAUA AA A UUAU^ C ACUACA 120 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Star sequence | Lch-Mir-130-P2b_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCUCUGACUUUAUUGCACUACU -22
Get sequence
|
| Mature sequence | Lch-Mir-130-P2b_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
Get sequence
|
