| MirGeneDB ID | Lch-Mir-130-P1a |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P1a Ami-Mir-130-P1a Cli-Mir-130-P1a Cmi-Mir-130-P1a Cpi-Mir-130-P1a Dre-Mir-130-P1a1 Dre-Mir-130-P1a2 Gga-Mir-130-P1a Gja-Mir-130-P1a Gmo-Mir-130-P1a1 Gmo-Mir-130-P1a2 Loc-Mir-130-P1a Mal-Mir-130-P1a1 Mal-Mir-130-P1a2 Mdo-Mir-130-P1a Mun-Mir-130-P1a Oan-Mir-130-P1a Pbv-Mir-130-P1a Sha-Mir-130-P1a Spt-Mir-130-P1a Sto-Mir-130-P1a Tgu-Mir-130-P1a Tni-Mir-130-P1a2 Xla-Mir-130-P1a3 Xla-Mir-130-P1a4 Xtr-Mir-130-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126620.1: 806769-806827 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P1a) |
Mir-130-P4a
JH126620.1: 792824-792880 [-]
Ensembl
Mir-130-P3a JH126620.1: 795127-795190 [-] Ensembl Mir-130-P2a JH126620.1: 804317-804379 [-] Ensembl Mir-130-P1a JH126620.1: 806769-806827 [-] Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
GAGGUGGCUGGCUCUAUACUGUUGGCCAGGGCCCUUUUUCUGUUGUACUACUGGAAAUUAAGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGAAAUGCGACCCUCUUGAAACGet precursor sequence |
| Structure | 10 20 30 40 50 GAGGUGGCUGGCUCUAUA--| UG G UC A GGAAAU CUGU GCCAG GCCCUUUU UGUUGUACU CU \ GACG CGGUU CGGGAAAA AUAACGUGA GA U CAAAGUUCUCCCAGCGUAAA^ GU A UU C GUAGAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-130-P1a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCCCUUUUUCUGUUGUACUACU -22
Get sequence
|
| Mature sequence | Lch-Mir-130-P1a_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- CAGUGCAAUAUUAAAAGGGCAU -59
Get sequence
|
