MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-130-P1a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-130a
Paralogues Tgu-Mir-130-P1b  Tgu-Mir-130-P2a  Tgu-Mir-130-P2b  Tgu-Mir-130-P3a  Tgu-Mir-130-P4a 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
15: 6177590-6177648 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a)
Mir-130-P4a 15: 6168615-6168675 [-] UCSC Ensembl
Mir-130-P3a 15: 6169809-6169872 [-] UCSC Ensembl
Mir-130-P1a 15: 6177590-6177648 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAGUCUCUGAAGUAUGCUGUUGUCCAGAGCCCUUUUUCUGUUGUACUACUGGCAAUUAUGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGAAACAUGACCCCCUUUAGCA
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Structure
        10          20        30        40        50         
GAAAGUCUCUGAAGUAUG--|     U    A        UC         A  GGCAAU 
                    CUGUUG CCAG GCCCUUUU  UGUUGUACU CU      \
                    GACGGU GGUU CGGGAAAA  AUAACGUGA GA      U
ACGAUUUCCCCCAGUACAAA^     C    A        UU         C  GUAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-130-P1a_5p*

mirBase accessionMIMAT0027006
Sequence
0- GCCCUUUUUCUGUUGUACUACU -22
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Mature sequence

Tgu-Mir-130-P1a_3p

mirBase accessionMIMAT0014573
Sequence
37- CAGUGCAAUAUUAAAAGGGCAU -59
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