MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-130-P1a

Family name MIR-130 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-130-P1b  Loc-Mir-130-P2a  Loc-Mir-130-P2b  Loc-Mir-130-P3a  Loc-Mir-130-P4a 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG20: 1567777-1567836 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a)		 Mir-130-P1a LG20: 1567777-1567836 [+] Ensembl
Mir-130-P2a LG20: 1568905-1568967 [+] Ensembl
Mir-130-P3a LG20: 1574095-1574160 [+] Ensembl
Mir-130-P4a LG20: 1575811-1575871 [+] Ensembl
Seed CUCUUUU
Precursor
(pre-Mir +30nt flank)		 
UGACAUGGCUUUACUGUUUUGUUGUCCACGGCUCUUUUUCUGUUGUACUACUGUGAAAAACAGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGACAGAAAAGCGACCCCCCCUUUCC
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Structure
        10          20        30        40        50         
UGACAUGGCUUUACUGU--|      U   CG        UC         A  GUGAAA 
                   UUUGUUG CCA  GCUCUUUU  UGUUGUACU CU      A
                   AGACAGU GGU  CGGGAAAA  AUAACGUGA GA      A
CCUUUCCCCCCCAGCGAAA^      C   UA        UU         C  GUAGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-130-P1a_5p
mirBase accessionNone
Sequence 
0- GCUCUUUUUCUGUUGUACUACU -22
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Co-mature sequence

Loc-Mir-130-P1a_3p
mirBase accessionNone
Sequence 
38- CAGUGCAAUAUUAAAAGGGCAU -60
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