MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-130-P1a

Family name MIR-130 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-130a
Paralogues Gga-Mir-130-P1b  Gga-Mir-130-P2a  Gga-Mir-130-P2b  Gga-Mir-130-P3a  Gga-Mir-130-P4a 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 15: 703569-703627 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a)		 Mir-130-P4a 15: 694747-694807 [-] UCSC Ensembl
Mir-130-P3a 15: 695881-695944 [-] UCSC Ensembl
Mir-130-P2a 15: 702346-702408 [-] UCSC Ensembl
Mir-130-P1a 15: 703569-703627 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
GGAAGUCUCUGAAGUAUGCUGUUGUCCAGAGCCCUUUUUCUGUUGUACUACUGGCAAUUAUGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGAAACAUGACCCCCUUUAGCA
Get precursor sequence
Structure
        10          20        30        40        50         
GGAAGUCUCUGAAGUAUG--|     U    A        UC         A  GGCAAU 
                    CUGUUG CCAG GCCCUUUU  UGUUGUACU CU      \
                    GACGGU GGUU CGGGAAAA  AUAACGUGA GA      U
ACGAUUUCCCCCAGUACAAA^     C    A        UU         C  GUAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-130-P1a_5p*
mirBase accessionMIMAT0026532
Sequence 
0- GCCCUUUUUCUGUUGUACUACU -22
Get sequence
Proposed targets TargetScanVert: gga-miR-130a-5p
miRDB: MIMAT0026532
Mature sequence

Gga-Mir-130-P1a_3p
mirBase accessionMIMAT0001167
Sequence 
37- CAGUGCAAUAUUAAAAGGGCAU -59
Get sequence
Proposed targets TargetScanVert: gga-miR-130a-3p
miRDB: MIMAT0001167