MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-130-P1a

Family name MIR-130 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-130-P1b  Sto-Mir-130-P1c  Sto-Mir-130-P2a  Sto-Mir-130-P2b  Sto-Mir-130-P3a  Sto-Mir-130-P3b  Sto-Mir-130-P3c  Sto-Mir-130-P4a 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01012481.1: 61197-61254 [+]
Clustered miRNAs
(< 50kb from Mir-130-P1a)		 Mir-130-P1a BFAA01012481.1: 61197-61254 [+]
Mir-130-P2a BFAA01012481.1: 61702-61763 [+]
Mir-130-P3a BFAA01012481.1: 68285-68351 [+]
Mir-130-P4a BFAA01012481.1: 69134-69193 [+]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UGGCGUUGUUAUUGAAGUCUGUUGACCGGGGCCCUUUUCAUGUUGUACUACUGAGAUUGAGUUAAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGUAUUCUCCACCUUCCCCACU
Get precursor sequence
Structure
        10          20        30        40        50        
UGGCGUUGUUAUUGAAGU--|    GA    G        C          A  GAGAU 
                    CUGUU  CCGG GCCCUUUU AUGUUGUACU CU     U
                    GACGG  GGUU CGGGAAAA UAUAACGUGA GA     G
UCACCCCUUCCACCUCUUAU^    UC    A        U          C  AUUGA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Sto-Mir-130-P1a_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUCAUGUUGUACUACU -22
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Mature sequence

Sto-Mir-130-P1a_3p
mirBase accessionNone
Sequence 
36- CAGUGCAAUAUUAAAAGGGCAU -58
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