MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-130-P1c

Family name MIR-130 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-130-P1a  Sto-Mir-130-P1b  Sto-Mir-130-P2a  Sto-Mir-130-P2b  Sto-Mir-130-P3a  Sto-Mir-130-P3b  Sto-Mir-130-P3c  Sto-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cja-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Eca-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Laf-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmr-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Neu-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pab-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01048252.1: 1890-1948 [-]
Clustered miRNAs
(< 50kb from Mir-130-P1c)		 Mir-130-P3c BFAA01048252.1: 939-1004 [-]
Mir-130-P1c BFAA01048252.1: 1890-1948 [-]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
GUUGACUGGUUGGUUCCCUCCCUGGCCAAUGCCCUUUUCAGGUUGUGCUACUGUGUAUAUUGGUAGGCAGUGCAAUAUUAAAGGGGCAUUGGACCGAGCGAGAUUAAGCCUCACCACCA
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Structure
        10        20          30        40        50         
GUUGACUGGUUGGUUCCC  C  -  -|            CAG    UG  A  GUGUAU 
                  UC CU GG CCAAUGCCCUUUU   GUUG  CU CU      \
                  AG GA CC GGUUACGGGGAAA   UAAC  GA GG      A
ACCACCACUCCGAAUUAG  C  G  A^            UUA    GU  C  AUGGUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Sto-Mir-130-P1c_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCCCUUUUCAGGUUGUGCUACUGUG -25
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Mature sequence

Sto-Mir-130-P1c_3p
mirBase accessionNone
Sequence 
37- CAGUGCAAUAUUAAAGGGGCAU -59
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