MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-130-P1a  Gja-Mir-130-P1b  Gja-Mir-130-P2a  Gja-Mir-130-P2b  Gja-Mir-130-P3a  Gja-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Ete-Mir-130-P1c  Hsa-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015165953.1: 38741-38802 [-]
Precursor
(pre-Mir +30nt flank)
CUGAUACACUGGGCAUGGCUCCUGUCCGAGGCUCUUGCCACAUUGUGCUACUGGCAGGGCCCAGCCCAAGCAGUGCCAUGUCGAAAGGGCAUUGGGUGGGUGGCCACAGCUGCAUGAAAUCU
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Structure
        10         20         30        40        50        60
CUGAUACACUGGGCAUG-   -| UG     G      GCC    U UG  A  GGCAGGG 
                  GCU CC  UCCGA GCUCUU   ACAU G  CU CU       C
                  CGG GG  GGGUU CGGGAA   UGUA C  GA GA       C
UCUAAAGUACGUCGACAC   U^ GU     A      AGC    C GU  C  ACCCGAC 
120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Gja-Mir-130-P1c_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUCUUGCCACAUUGUGCUACU -22
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Mature sequence

Gja-Mir-130-P1c_3p (predicted)

mirBase accessionNone
Sequence
40- CAGUGCCAUGUCGAAAGGGCAU -62
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