MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-130-P1b

Family name MIR-130 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-130-P1a  Gja-Mir-130-P1c  Gja-Mir-130-P2a  Gja-Mir-130-P2b  Gja-Mir-130-P3a  Gja-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015174315.1: 144022-144084 [+]
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P1b NW_015174315.1: 144022-144084 [+]
Mir-130-P2b NW_015174315.1: 146123-146180 [+]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
CUUCUGGAUGGCGAGAAGCGUCUGUCCACUGCCCUUUUUGUGUUGUACUACUAGCAAACCUGCACAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGCAAUGCUGUUCGCCUCACUGCAU
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Structure
        10           20        30        40        50        60 
CUUCUGGAUGGCGAGAAGC---|U   U   C         U UG       A  AGCAAACC 
                      G CUG CCA UGCCCUUUU G  UUGUACU CU        \
                      C GAC GGU ACGGGAAAA U  AACGUGA GA        U
UACGUCACUCCGCUUGUCGUAA^-   C   U         U GU       C  AAAACACG 
 120       110        100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-130-P1b_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUGUGUUGUACUACU -22
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Mature sequence

Gja-Mir-130-P1b_3p
mirBase accessionNone
Sequence 
41- CAGUGCAAUGUUAAAAGGGCAU -63
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