MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-130-P1b

Family name MIR-130 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-130a
Paralogues Xtr-Mir-130-P1a  Xtr-Mir-130-P2a  Xtr-Mir-130-P2b  Xtr-Mir-130-P3a  Xtr-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr2: 91417449-91417513 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P1b chr2: 91417449-91417513 [+] UCSC Ensembl
Mir-130-P2b chr2: 91417661-91417722 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
CUACAAAUCAAUUUUAUGUGCCUGUCCAGUGCCCUUUUUAUGUUGUACUACUAGUGGUCACACACAAAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGGGCUACUGGCCACAUUCUGACUG
Get precursor sequence
Structure
        10        20          30        40        50        60  
CUACAAAUCAAUUUUAUGUG--|   U             U          A  AGUGGUCAC 
                      CCUG CCAGUGCCCUUUU AUGUUGUACU CU         \
                      GGAC GGUUACGGGAAAA UGUAACGUGA GA         A
GUCAGUCUUACACCGGUCAUCG^   C             U          C  AAAAAACAC 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-130-P1b_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUAUGUUGUACUACU -22
Get sequence
Mature sequence

Xtr-Mir-130-P1b_3p
mirBase accessionMIMAT0003591
Sequence 
43- CAGUGCAAUGUUAAAAGGGCAU -65
Get sequence
Proposed targets TargetScanVert: xtr-miR-130a