MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-130-P1b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-130b
Paralogues Oan-Mir-130-P1a  Oan-Mir-130-P1c  Oan-Mir-130-P2a  Oan-Mir-130-P2b  Oan-Mir-130-P3b 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041744.1: 11810731-11810793 [-]
Clustered miRNAs
(< 50kb from Mir-130-P1b)
Mir-130-P3b NC_041744.1: 11797223-11797287 [-]
Mir-130-P2b NC_041744.1: 11809710-11809771 [-]
Mir-130-P1b NC_041744.1: 11810731-11810793 [-]
Precursor
(pre-Mir +30nt flank)
UGAACAUUUCAUGAGUGGUAUCUGUCUAGUGCCCUUUUUAUGUUGUACUACUAGUGAUCUUGCACAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGUGAUACUGUUCACCUUCCUGCCU
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Structure
        10        20          30        40        50        60 
UGAACAUUUCAUGAGUGGUAU--|  U             U          A  AGUGAUCU 
                       CUG CUAGUGCCCUUUU AUGUUGUACU CU        \
                       GAC GGUUACGGGAAAA UGUAACGUGA GA        U
UCCGUCCUUCCACUUGUCAUAGU^  C             U          C  AAAACACG 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-130-P1b_5p*

mirBase accessionMIMAT0007158
Sequence
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Oan-Mir-130-P1b_3p

mirBase accessionMIMAT0007159
Sequence
41- CAGUGCAAUGUUAAAAGGGCAU -63
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