Mir-130-P1b

MirGeneDB ID

Pbv-Mir-130-P1b

Family name

MIR-130 (all species)

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-130d

Paralogues

Pbv-Mir-130-P1a Pbv-Mir-130-P1c Pbv-Mir-130-P2a Pbv-Mir-130-P2b Pbv-Mir-130-P3a Pbv-Mir-130-P4a

Orthologues

Aca-Mir-130-P1b Ami-Mir-130-P1b Cli-Mir-130-P1b Cmi-Mir-130-P1b Cpi-Mir-130-P1b Dre-Mir-130-P1b1 Gga-Mir-130-P1b Gja-Mir-130-P1b Lch-Mir-130-P1b Loc-Mir-130-P1b Mdo-Mir-130-P1b Mun-Mir-130-P1b Oan-Mir-130-P1b Sha-Mir-130-P1b Spt-Mir-130-P1b Sto-Mir-130-P1b Tgu-Mir-130-P1b Xla-Mir-130-P1b3 Xla-Mir-130-P1b4 Xtr-Mir-130-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE959299.1: 49968-50030 [-]

Clustered miRNAs
(< 50kb from Mir-130-P1b)

Mir-130-P2b KE959299.1: 49099-49160 [-]
Mir-130-P1b KE959299.1: 49968-50030 [-]

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

UUUCUGGAUGGCAAGAGGUGUCUGUCCACUGCCCUUUUUAUGUUGUACUACUAGUGAACACACACAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGCAAUGCUCAGUCAGCUAAAAUGC

Get precursor sequence

Structure

        10           20        30        40        50        60 
UUUCUGGAUGGCAAGAGG---| U   U   C         U          A  AGUGAACA 
                     UG CUG CCA UGCCCUUUU AUGUUGUACU CU        \
                     AC GAC GGU ACGGGAAAA UGUAACGUGA GA        C
CGUAAAAUCGACUGACUCGUA^ -   C   U         U          C  AAAACACA 
 120       110        100        90        80        70