MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-130-P1a

Family name MIR-130 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-130-P1b  Gja-Mir-130-P1c  Gja-Mir-130-P2a  Gja-Mir-130-P2b  Gja-Mir-130-P3a  Gja-Mir-130-P4a 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015164679.1: 146373-146431 [+]
Clustered miRNAs
(< 50kb from Mir-130-P1a)		 Mir-130-P1a NW_015164679.1: 146373-146431 [+]
Mir-130-P2a NW_015164679.1: 147797-147855 [+]
Mir-130-P3a NW_015164679.1: 166819-166883 [+]
Mir-130-P4a NW_015164679.1: 168764-168825 [+]
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
AAGUCUCUCUGUGGUCAACUGUUGGCUGGAGCCCUUUUUCUGUUGUACUACUGGCAAGUAUGAUUAGCAGUGCAAUAUUAAAAGGGCAUUGGCUAGCAGAUACAGAACCUUCUCUGAGA
Get precursor sequence
Structure
        10          20        30        40        50         
AAGUCUCUCUGUGGUCAA--|       UG A        UC         A  GGCAAG 
                    CUGUUGGC  G GCCCUUUU  UGUUGUACU CU      \
                    GACGAUCG  U CGGGAAAA  AUAACGUGA GA      U
AGAGUCUCUUCCAAGACAUA^       GU A        UU         C  UUAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Gja-Mir-130-P1a_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUCUGUUGUACUACU -22
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Mature sequence

Gja-Mir-130-P1a_3p
mirBase accessionNone
Sequence 
37- CAGUGCAAUAUUAAAAGGGCAU -59
Get sequence