Mir-130-P1a4

MirGeneDB ID

Xla-Mir-130-P1a4

Family name

MIR-130 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-130c-1

Paralogues

Xla-Mir-130-P1a3 Xla-Mir-130-P1b3 Xla-Mir-130-P1b4 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xla-Mir-130-P3a3 Xla-Mir-130-P3a4 Xla-Mir-130-P4a3 Xla-Mir-130-P4a4

Orthologues

Aca-Mir-130-P1a Ami-Mir-130-P1a Cli-Mir-130-P1a Cmi-Mir-130-P1a Cpi-Mir-130-P1a Gga-Mir-130-P1a Gja-Mir-130-P1a Lch-Mir-130-P1a Loc-Mir-130-P1a Mdo-Mir-130-P1a Mun-Mir-130-P1a Oan-Mir-130-P1a Pbv-Mir-130-P1a Sha-Mir-130-P1a Spt-Mir-130-P1a Sto-Mir-130-P1a Tgu-Mir-130-P1a Xtr-Mir-130-P1a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030725.1: 126921116-126921174 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P1a4)

Mir-130-P4a4 NC_030725.1: 126913055-126913114 [-] UCSC Ensembl
Mir-130-P3a4 NC_030725.1: 126914978-126915041 [-] UCSC Ensembl
Mir-130-P2a4 NC_030725.1: 126920251-126920313 [-] UCSC Ensembl
Mir-130-P1a4 NC_030725.1: 126921116-126921174 [-] UCSC Ensembl

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

UGUGGAAAGACGUGGAACCUGUUAUCCGUGGCCCUUUUUCUGUUGUACUACUGGAAUUUGUAAUUAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGAACCCUAACAAAGCCUAAUA

Get precursor sequence

Structure

        10          20        30        40        50         
UGUGGAAAGACGUGGAAC--|     U   UG        UC         A  GGAAUU 
                    CUGUUA CCG  GCCCUUUU  UGUUGUACU CU      \
                    GACGGU GGU  CGGGAAAA  AUAACGUGA GA      U
AUAAUCCGAAACAAUCCCAA^     C   UA        UU         C  UUAAUG 
       110       100        90        80        70        60