MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-130-P2a4

Family name MIR-130 (all species)
Seed AGUGCAA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xla-Mir-130-P2a3  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Hsa-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mml-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Xtr-Mir-130-P2a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030725.1: 126920251-126920313 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a4)
Mir-130-P4a4 NC_030725.1: 126913055-126913114 [-] UCSC Ensembl
Mir-130-P1a4 NC_030725.1: 126921116-126921174 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUUGGGGGAUAGUAAGCUUGUGUGAGUUGCUCUGACAGUGUUGCACUACUGUGAUCUCAAAUGAAGCAGUGCAAUAGUAUUGUCAAAGCAUUUCAUUCCAGCACAACUCCAGCUUUUUGCA
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Structure
        10          20        30        40           50         
CCAUUGGGGGAUAGUAA--   UGU     U    C       ---|       A  GUGAUC 
                   GCU   GUGAG UGCU UGACAGU   GUUGCACU CU      U
                   CGA   UACUU ACGA ACUGUUA   UAACGUGA GA      C
ACGUUUUUCGACCUCAACA   CCU     U    A       UGA^       C  AGUAAA 
 120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-130-P2a4_5p*

mirBase accessionNone
Sequence
0- GCUCUGACAGUGUUGCACUACU -22
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Mature sequence

Xla-Mir-130-P2a4_3p

mirBase accessionNone
Sequence
38- CAGUGCAAUAGUAUUGUCAAAGCAU -63
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