MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-301b
Paralogues Ami-Mir-130-P1a  Ami-Mir-130-P1b  Ami-Mir-130-P1c  Ami-Mir-130-P2b  Ami-Mir-130-P3a 
Orthologues Aca-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017709599.1: 24537-24597 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-130-P2a)
Mir-130-P3a NW_017709599.1: 17735-17798 [-] UCSC
Mir-130-P2a NW_017709599.1: 24537-24597 [-] UCSC
Mir-130-P1a NW_017709599.1: 25792-25850 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGAAUGUGACAGUGGCUGCUGGUAUCGCUGGCUCUGACAAUGUUGCACUACUGUCUGCACAAAUAAAGCAGUGCAAUAAUAUUGUCAAAGCAUUUGGUUCCAGUCCUAAUACAUCCUUAUG
Get precursor sequence
Structure
        10        20        30        40           50         
AGAAUGUGACAGUGGCUG    U    CUG   C         ---|     A  GUCUGC 
                  CUGG AUCG   GCU UGACAAUGU   UGCACU CU      A
                  GACC UGGU   CGA ACUGUUAUA   ACGUGA GA      C
GUAUUCCUACAUAAUCCU    U    UUA   A         AUA^     C  AAUAAA 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha site +2 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Ami-Mir-130-P2a_5p* (predicted)

mirBase accessionMIMAT0038262
Sequence
0- GCUCUGACAAUGUUGCACUACU -22
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Mature sequence

Ami-Mir-130-P2a_3p

mirBase accessionMIMAT0038263
Sequence
38- CAGUGCAAUAAUAUUGUCAAAGC -61
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