MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-130-P2a1

Family name MIR-130 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-301c
Paralogues Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Gmo-Mir-130-P2a2  Gmo-Mir-130-P2b1  Gmo-Mir-130-P3b1 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Xtr-Mir-130-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig149088: 250-312 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
AAACAGGCUCAGAACCUGCUGGGGUCCUCUGCCAUGAUGACGUUGCACUACUGUUCCAAACGCCCAAGCAGUGCAACAGUAUUGUCAUAGCAGAGGGCCUACGCACAUCCUACCGGUAGGCCU
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Structure
        10          20        30        40           50         
AAACAGGCUCAGAACCU--  UG           C    UG C---|       A  GUUCCA 
                   GC  GGGUCCUCUGC AUGA  A    GUUGCACU CU      A
                   CG  UCCGGGAGACG UACU  U    CAACGUGA GA      A
UCCGGAUGGCCAUCCUACA  CA           A    GU AUGA^       C  ACCCGC 
 120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-130-P2a1_5p*
mirBase accessionNone
Sequence 
0- GCCAUGAUGACGUUGCACUACU -22
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Mature sequence

Gmo-Mir-130-P2a1_3p
mirBase accessionMIMAT0044012
Sequence 
38- CAGUGCAACAGUAUUGUCAUAGCAG -63
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