Mir-130-P1a

MirGeneDB ID

Cpi-Mir-130-P1a

Family name

MIR-130 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-130c

Paralogues

Cpi-Mir-130-P1b Cpi-Mir-130-P1c Cpi-Mir-130-P2a Cpi-Mir-130-P2b Cpi-Mir-130-P3a Cpi-Mir-130-P4a

Orthologues

Aca-Mir-130-P1a Ami-Mir-130-P1a Cli-Mir-130-P1a Cmi-Mir-130-P1a Dre-Mir-130-P1a1 Dre-Mir-130-P1a2 Gga-Mir-130-P1a Gja-Mir-130-P1a Gmo-Mir-130-P1a1 Gmo-Mir-130-P1a2 Lch-Mir-130-P1a Loc-Mir-130-P1a Mal-Mir-130-P1a1 Mal-Mir-130-P1a2 Mdo-Mir-130-P1a Mun-Mir-130-P1a Oan-Mir-130-P1a Pbv-Mir-130-P1a Sha-Mir-130-P1a Spt-Mir-130-P1a Sto-Mir-130-P1a Tgu-Mir-130-P1a Tni-Mir-130-P1a2 Xla-Mir-130-P1a3 Xla-Mir-130-P1a4 Xtr-Mir-130-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(chrPic1)

JH584438: 2912867-2912925 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P1a)

Mir-130-P4a JH584438: 2903670-2903730 [-] UCSC Ensembl
Mir-130-P3a JH584438: 2904974-2905037 [-] UCSC Ensembl
Mir-130-P2a JH584438: 2911660-2911722 [-] UCSC Ensembl
Mir-130-P1a JH584438: 2912867-2912925 [-] UCSC Ensembl

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

GAAAGUCUCUGAAGUAUACUGUUGUCCAGAGCCCUUUUUCUGUUGUACUACUGGCAAUUAUGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGAAACAUGACCCCCUUUAACA

Get precursor sequence

Structure

        10          20        30        40        50         
GAAAGUCUCUGAAGUAUA--|     U    A        UC         A  GGCAAU 
                    CUGUUG CCAG GCCCUUUU  UGUUGUACU CU      \
                    GACGGU GGUU CGGGAAAA  AUAACGUGA GA      U
ACAAUUUCCCCCAGUACAAA^     C    A        UU         C  GUAGUA 
       110       100        90        80        70        60