MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-130-P1a2

Family name MIR-130 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-130c-1
Paralogues Dre-Mir-130-P1a1  Dre-Mir-130-P1b1  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Dre-Mir-130-P2b1  Dre-Mir-130-P3a1  Dre-Mir-130-P3b1  Dre-Mir-130-P4a1 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xtr-Mir-130-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr10: 17453405-17453463 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a2)		 Mir-130-P1a2 chr10: 17453405-17453463 [+] UCSC Ensembl
Mir-130-P2a2 chr10: 17454501-17454563 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UACGGUGAUAUUGACCAUGUUUUGUCCAUUGCCCUUUUUCUGUUGUACUACUGGCCAAUCAGAAGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGAUAGAACAGAGUCCUUCACCUCUC
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Structure
        10            20        30        40        50         
UACGGUGAUAUUGACCA----|   UU U   U         UC         A  GGCCAA 
                     UGUU  G CCA UGCCCUUUU  UGUUGUACU CU      \
                     AUAG  C GGU ACGGGAAAA  AUAACGUGA GA      U
CUCUCCACUUCCUGAGACAAG^   U- -   U         UU         C  GAAGAC 
       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-130-P1a2_5p*
mirBase accessionMIMAT0031969
Sequence 
0- GCCCUUUUUCUGUUGUACUACU -22
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Mature sequence

Dre-Mir-130-P1a2_3p
mirBase accessionMIMAT0001828
Sequence 
37- CAGUGCAAUAUUAAAAGGGCAU -59
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Proposed targets TargetScanFish: dre-miR-130c