MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-130-P3a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-454
Paralogues Cpi-Mir-130-P1a  Cpi-Mir-130-P1b  Cpi-Mir-130-P1c  Cpi-Mir-130-P2a  Cpi-Mir-130-P2b  Cpi-Mir-130-P4a 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Dre-Mir-130-P3a1  Gga-Mir-130-P3a  Gja-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xtr-Mir-130-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584438: 2904974-2905037 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3a)
Mir-130-P4a JH584438: 2903670-2903730 [-] UCSC Ensembl
Mir-130-P3a JH584438: 2904974-2905037 [-] UCSC Ensembl
Mir-130-P2a JH584438: 2911660-2911722 [-] UCSC Ensembl
Mir-130-P1a JH584438: 2912867-2912925 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAUCCAGCUUCCUAACCUUAAGGAAGAGACCCUAUCAAUAUUGCCUCUGCUUUUGUGAUCAGGGUAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCUUUGGAGGGUAUUCUUCACAGGAAAG
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Structure
        10         20         30           40        50        60
ACAAUCCAGCUUCCUAA-   -                 ---|        CU     UUUGUG 
                  CCU UAAGGAAGAGACCCUAU   CAAUAUUGC  CUGCU      A
                  GGA GUUUCUUUUCUGGGAUA   GUUAUAACG  GAUGA      U
GAAAGGACACUUCUUAUG   G                 UUC^        U-     UGGGAC 
  120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-130-P3a_5p*

mirBase accessionMIMAT0037885
Sequence
0- ACCCUAUCAAUAUUGCCUCUGCU -23
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Mature sequence

Cpi-Mir-130-P3a_3p

mirBase accessionMIMAT0037886
Sequence
39- UAGUGCAAUAUUGCUUAUAGGGUCU -64
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