Mir-130-P3a

MirGeneDB ID

Gga-Mir-130-P3a

Family name

MIR-130 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-454

Paralogues

Gga-Mir-130-P1a Gga-Mir-130-P1b Gga-Mir-130-P2a Gga-Mir-130-P2b Gga-Mir-130-P4a

Orthologues

Aca-Mir-130-P3a Ami-Mir-130-P3a Cli-Mir-130-P3a Cmi-Mir-130-P3a Cpi-Mir-130-P3a Dre-Mir-130-P3a1 Gja-Mir-130-P3a Lch-Mir-130-P3a Loc-Mir-130-P3a Mal-Mir-130-P3a1 Mun-Mir-130-P3a Pbv-Mir-130-P3a Spt-Mir-130-P3a Sto-Mir-130-P3a Tgu-Mir-130-P3a Xla-Mir-130-P3a3 Xla-Mir-130-P3a4 Xtr-Mir-130-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

15: 695881-695944 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P3a)

Mir-130-P4a 15: 694747-694807 [-] UCSC Ensembl
Mir-130-P3a 15: 695881-695944 [-] UCSC Ensembl
Mir-130-P2a 15: 702346-702408 [-] UCSC Ensembl
Mir-130-P1a 15: 703569-703627 [-] UCSC Ensembl

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

AUUAUCCAGCUUCCUAACCUUAAGGAUGAGACCCUAUCAAUAUUGCCUCUGCUUUUGUGCUCAGGGUAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCUUUUGAGGGUAUUCUUCAUGGAGAGA

Get precursor sequence

Structure

        10         20         30           40        50        60
AUUAUCCAGCUUCCUAA-    -     U          ---|        CU     UUUGUG 
                  CCUU AAGGA GAGACCCUAU   CAAUAUUGC  CUGCU      C
                  GGAG UUUCU UUCUGGGAUA   GUUAUAACG  GAUGA      U
AGAGAGGUACUUCUUAUG    U     U          UUC^        U-     UGGGAC 
  120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-130-P3a_5p*

mirBase accession

MIMAT0007291

Sequence

0- ACCCUAUCAAUAUUGCCUCUGCU -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-454-5p
miRDB: MIMAT0007291

Mature sequence

Gga-Mir-130-P3a_3p

mirBase accession

MIMAT0007292

Sequence

39- UAGUGCAAUAUUGCUUAUAGGGUCU -64

Get sequence

Proposed targets

TargetScanVert: gga-miR-454-3p
miRDB: MIMAT0007292