MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-130a
Paralogues Mdo-Mir-130-P1a  Mdo-Mir-130-P1b  Mdo-Mir-130-P2b  Mdo-Mir-130-P3b  Mdo-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Lch-Mir-130-P1c  Mml-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
5: 291845609-291845670 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACCAAGGCAGCUUUCCACUCCUGGCCAGAGCUCUUUUCACAUUGUGCUACUGUCUGCACCUAUCACUAGCAGUGCAAUGUAAAAAGGGCAUUGGCUGGGCAGUGCCAACCAGCACCAACAC
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Structure
        10         20         30        40        50        60
AACCAAGGCAGCUUUCC-   -| UG     A        C      UG  A  GUCUGCA 
                  ACU CC  GCCAG GCUCUUUU ACAUUG  CU CU       C
                  UGA GG  CGGUU CGGGAAAA UGUAAC  GA GA       C
CACAACCACGACCAACCG   C^ GU     A        A      GU  C  UCACUAU 
120       110       100        90        80        70
Deep sequencing
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CommentThe post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' moR reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.
3' NTU Yes
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-130-P1c_5p*

mirBase accessionMIMAT0026664
Sequence
0- GCUCUUUUCACAUUGUGCUACU -22
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Proposed targets TargetScanVert: mdo-miR-130a-5p
Mature sequence

Mdo-Mir-130-P1c_3p

mirBase accessionMIMAT0004106
Sequence
40- CAGUGCAAUGUAAAAAGGGCAU -62
Get sequence
Proposed targets TargetScanVert: mdo-miR-130a-3p