| MirGeneDB ID | Lch-Mir-130-P4a |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c |
| Orthologues | Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cja-Mir-130-P4a Cmi-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Dre-Mir-130-P4a1 Eca-Mir-130-P4a Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Hsa-Mir-130-P4a Laf-Mir-130-P4a Loc-Mir-130-P4a Mal-Mir-130-P4a1 Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmr-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pab-Mir-130-P4a Pbv-Mir-130-P4a Rno-Mir-130-P4a Sha-Mir-130-P4a Spt-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xla-Mir-130-P4a3 Xla-Mir-130-P4a4 Xtr-Mir-130-P4a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126620.1: 792824-792880 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P4a) |
Mir-130-P4a
JH126620.1: 792824-792880 [-]
Ensembl
Mir-130-P3a JH126620.1: 795127-795190 [-] Ensembl Mir-130-P2a JH126620.1: 804317-804379 [-] Ensembl Mir-130-P1a JH126620.1: 806769-806827 [-] Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
GCUAUAGAAUUUAGAAGUGGACUGCCUGUCACUCUUUCCCUGUUGCACUACUGUGGAACCUCUAGCAGUGCAAUAAUGAAAGGGCGUCAGUCUGCCAAUCUUAACACUUCUGCACACGet precursor sequence |
| Structure | 10 20 30 40 50 GCUAUAGAAUUUAGAAG---| ACUGC UCA CC A GUGGA UGG CUG CUCUUUC UGUUGCACU CU \ ACC GAC GGGAAAG AUAACGUGA GA A CACACGUCUUCACAAUUCUA^ GUCU- UGC UA C UCUCC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Lch-Mir-130-P4a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
|
| Mature sequence | Lch-Mir-130-P4a_3p (predicted) |
| mirBase accession | None |
| Sequence |
35- CAGUGCAAUAAUGAAAGGGCGU -57
Get sequence
|
