Mir-130-P4a

MirGeneDB ID

Hsa-Mir-130-P4a

Family name

MIR-130 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-130b

Paralogues

Hsa-Mir-130-P1c Hsa-Mir-130-P2a Hsa-Mir-130-P2b Hsa-Mir-130-P3b

Orthologues

Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cja-Mir-130-P4a Cmi-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Dre-Mir-130-P4a1 Eca-Mir-130-P4a Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Laf-Mir-130-P4a Lch-Mir-130-P4a Loc-Mir-130-P4a Mal-Mir-130-P4a1 Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmr-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pab-Mir-130-P4a Pbv-Mir-130-P4a Rno-Mir-130-P4a Sha-Mir-130-P4a Spt-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xla-Mir-130-P4a3 Xla-Mir-130-P4a4 Xtr-Mir-130-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr22: 21653316-21653375 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P4a)

Mir-130-P2a chr22: 21652990-21653049 [+] UCSC Ensembl
Mir-130-P4a chr22: 21653316-21653375 [+] UCSC Ensembl

Seed

CUCUUUC

Precursor
(pre-Mir +30nt flank)

CUGGGGGAGGCACUGGCAGGCCUGCCCGACACUCUUUCCCUGUUGCACUACUAUAGGCCGCUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCAGGUCCAGCCUGCUACCCUGGGAGG

Get precursor sequence

Structure

        10          20        30        40        50         
CUGGGGGAGGCACUGGCA--|     C    CA       CC         A  AUAGGC 
                    GGCCUG CCGA  CUCUUUC  UGUUGCACU CU      C
                    CUGGAC GGCU  GGGAAAG  GUAACGUGA GA      G
GGAGGGUCCCAUCGUCCGAC^     U    AC       UA         C  AGGGUC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-130-P4a_5p

mirBase accession

MIMAT0004680

Sequence

0- ACUCUUUCCCUGUUGCACUACU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004680
TargetScanVert: hsa-miR-130b-5p
TargetMiner: hsa-miR-130b-5p
miRDB: MIMAT0004680

Co-mature sequence

Hsa-Mir-130-P4a_3p

mirBase accession

MIMAT0000691

Sequence

38- CAGUGCAAUGAUGAAAGGGCAU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000691
TargetScanVert: hsa-miR-130b-3p
TargetMiner: hsa-miR-130b-3p
miRDB: MIMAT0000691