MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-130-P4a

Family name MIR-130 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-130b
Paralogues Cpo-Mir-130-P1c  Cpo-Mir-130-P2a  Cpo-Mir-130-P2b  Cpo-Mir-130-P3b 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_4: 19664670-19664729 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-130-P4a)		 Mir-130-P2a scaffold_4: 19664333-19664392 [+] UCSC
Mir-130-P4a scaffold_4: 19664670-19664729 [+] UCSC
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
ACUGAGAGGCACUAGCAAGGCCUGCCCGACACUCUUUCCCUGUUGCACUACUGUGGGCUACUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCAGGCCCUUCUCGCUGUCCACAGUGC
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Structure
        10          20        30        40        50         
ACUGAGAGGCACUAGCAA--|     C    CA       CC         A  GUGGGC 
                    GGCCUG CCGA  CUCUUUC  UGUUGCACU CU      U
                    CCGGAC GGCU  GGGAAAG  GUAACGUGA GA      A
CGUGACACCUGUCGCUCUUC^     U    AC       UA         C  AGGGUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-130-P4a_5p*
mirBase accessionMIMAT0046982
Sequence 
0- ACUCUUUCCCUGUUGCACUACU -22
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Mature sequence

Cpo-Mir-130-P4a_3p
mirBase accessionMIMAT0046983
Sequence 
38- CAGUGCAAUGAUGAAAGGGCAU -60
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