Mir-130-P3b

MirGeneDB ID

Cpo-Mir-130-P3b

Family name

MIR-130 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-454

Paralogues

Cpo-Mir-130-P1c Cpo-Mir-130-P2a Cpo-Mir-130-P2b Cpo-Mir-130-P4a

Orthologues

Bta-Mir-130-P3b Cfa-Mir-130-P3b Cja-Mir-130-P3b Cmi-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Eca-Mir-130-P3b Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Laf-Mir-130-P3b Lch-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Neu-Mir-130-P3b Oan-Mir-130-P3b Pab-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_32: 7083450-7083514 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-130-P3b)

Mir-130-P3b scaffold_32: 7083450-7083514 [-] UCSC
Mir-130-P2b scaffold_32: 7094160-7094221 [-] UCSC

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

CAGAUUUCCUGUUUAUUACCAGAUCCUAGAACCCUAUCAAUAUUGUCUCUGCUGUAUAAAUAGCUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUGGUAUUUGGGAAAAACAAUGGGCAGGCUG

Get precursor sequence

Structure

        10          20        30           40        50        60 
CAGAUUUCCUGUUUAUUA--      C            ---|        CU     GUAUAAA 
                    CCAGAU CUAGAACCCUAU   CAAUAUUGU  CUGCU       \
                    GGUUUA GGUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGACGGGUAACAAAAAG      U            UUC^        U-     GUCUCGA 
   120       110       100        90        80         70