MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-130-P3b

Family name MIR-130 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-130-P1a  Cmi-Mir-130-P1b  Cmi-Mir-130-P2a  Cmi-Mir-130-P2b  Cmi-Mir-130-P3a  Cmi-Mir-130-P4a 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cja-Mir-130-P3b  Cpo-Mir-130-P3b  Dno-Mir-130-P3b  Dre-Mir-130-P3b1  Eca-Mir-130-P3b  Gmo-Mir-130-P3b1  Hsa-Mir-130-P3b  Laf-Mir-130-P3b  Lch-Mir-130-P3b  Mdo-Mir-130-P3b  Mml-Mir-130-P3b  Neu-Mir-130-P3b  Oan-Mir-130-P3b  Pab-Mir-130-P3b  Sha-Mir-130-P3b  Sto-Mir-130-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636009.1: 742939-743003 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3b)		 Mir-130-P1b KI636009.1: 735551-735612 [+] UCSC Ensembl
Mir-130-P2b KI636009.1: 739328-739389 [+] UCSC Ensembl
Mir-130-P3b KI636009.1: 742939-743003 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
GACUGUGACUUUUGACACUCAAGUACUGGGACCCUAUCGAUAUUGCCUCUGCUUUGUAGAUGGCUGUGAGUAGUGCAAUAUUGCUUAUAGGGUUUCAGUGCUUGGGAACUUCAACAGUUUGGUGA
Get precursor sequence
Structure
        10          20        30           40        50        60 
GACUGUGACUUUUGACA--           GG       ---|        CU     UUGUAGA 
                   CUCAAGUACUG  ACCCUAU   CGAUAUUGC  CUGCU       \
                   GGGUUCGUGAC  UGGGAUA   GUUAUAACG  GAUGA       U
AGUGGUUUGACAACUUCAA           UU       UUC^        U-     GUGUCGG 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-130-P3b_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCGAUAUUGCCUCUGCU -23
Get sequence
Mature sequence

Cmi-Mir-130-P3b_3p
mirBase accessionNone
Sequence 
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
Get sequence