MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-130-P3b

Family name MIR-130 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-130-P1c  Cja-Mir-130-P2a  Cja-Mir-130-P2b  Cja-Mir-130-P4a 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cmi-Mir-130-P3b  Cpo-Mir-130-P3b  Dno-Mir-130-P3b  Dre-Mir-130-P3b1  Eca-Mir-130-P3b  Gmo-Mir-130-P3b1  Hsa-Mir-130-P3b  Laf-Mir-130-P3b  Lch-Mir-130-P3b  Mdo-Mir-130-P3b  Mml-Mir-130-P3b  Neu-Mir-130-P3b  Oan-Mir-130-P3b  Pab-Mir-130-P3b  Sha-Mir-130-P3b  Sto-Mir-130-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021919.1: 89817611-89817675 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3b)		 Mir-130-P3b CM021919.1: 89817611-89817675 [-] UCSC Ensembl
Mir-130-P2b CM021919.1: 89832292-89832353 [-] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
AAAAAAAUCUGUUUAUCACCAGAUCCUAGAACCCUAUCAAUAUUAUCUGUGCUAUGUAAAUAGUUCUGAAUAGUGCAAUAUGGCUUAUAGGGUUUUGGUGUUUGGGAAGAACAAUGGGCAGGCUG
Get precursor sequence
Structure
        10          20        30        40        50        60  
AAAAAAAUCUGUUUAUCA--|    UC            CAAUAU   C  UG  AUGUAAAU 
                    CCAGA  CUAGAACCCUAU      UAU UG  CU        A
                    GGUUU  GGUUUUGGGAUA      AUA AC  GA        G
GUCGGACGGGUAACAAGAAG^    GU            UUCGGU   -  GU  UAAGUCUU 
   120       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Star sequence

Cja-Mir-130-P3b_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACCCUAUCAAUAUUAUCUGUGCU -23
Get sequence
Mature sequence

Cja-Mir-130-P3b_3p (predicted)
mirBase accessionNone
Sequence 
40- UAGUGCAAUAUGGCUUAUAGGGUUU -65
Get sequence