MirGeneDB 2.1

MirGeneDB ID

Mml-Mir-130-P3b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-454
Paralogues Mml-Mir-130-P1c  Mml-Mir-130-P2a  Mml-Mir-130-P2b  Mml-Mir-130-P4a 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cmi-Mir-130-P3b  Cpo-Mir-130-P3b  Dno-Mir-130-P3b  Dre-Mir-130-P3b1  Gmo-Mir-130-P3b1  Hsa-Mir-130-P3b  Lch-Mir-130-P3b  Mdo-Mir-130-P3b  Oan-Mir-130-P3b  Sha-Mir-130-P3b  Sto-Mir-130-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rheMac8_trace)
chr16: 30504574-30504638 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3b)
Mir-130-P2b chr16: 30490690-30490751 [+] UCSC Ensembl
Mir-130-P3b chr16: 30504574-30504638 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAAUUCUGUUUAUCACCAGAUCCUAGAACCCUAUCAAUAUUGUCUCUGCUGUGUAAAUAGUUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUGGUGUUUGGGAAGAACAAUGGGCAGGCUG
Get precursor sequence
Structure
        10          20        30           40        50        60 
AAAAAAUUCUGUUUAUCA--     UC            ---|        CU     GUGUAAA 
                    CCAGA  CUAGAACCCUAU   CAAUAUUGU  CUGCU       \
                    GGUUU  GGUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGACGGGUAACAAGAAG     GU            UUC^        U-     GUCUUGA 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Star sequence

Mml-Mir-130-P3b_5p*

mirBase accessionMIMAT0026880
Sequence
0- ACCCUAUCAAUAUUGUCUCUGCU -23
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Proposed targets TargetScanVert: mml-miR-454-5p
Mature sequence

Mml-Mir-130-P3b_3p

mirBase accessionMIMAT0006338
Sequence
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
Get sequence
Proposed targets TargetScanVert: mml-miR-454-3p