Mir-130-P4a

MirGeneDB ID

Rno-Mir-130-P4a

Family name

MIR-130 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-130b

Paralogues

Rno-Mir-130-P1c Rno-Mir-130-P2a Rno-Mir-130-P2b

Orthologues

Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cja-Mir-130-P4a Cmi-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Dre-Mir-130-P4a1 Eca-Mir-130-P4a Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Hsa-Mir-130-P4a Laf-Mir-130-P4a Lch-Mir-130-P4a Loc-Mir-130-P4a Mal-Mir-130-P4a1 Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmr-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pab-Mir-130-P4a Pbv-Mir-130-P4a Sha-Mir-130-P4a Spt-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xla-Mir-130-P4a3 Xla-Mir-130-P4a4 Xtr-Mir-130-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr11: 88129785-88129844 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P4a)

Mir-130-P2a chr11: 88129435-88129494 [+] UCSC Ensembl
Mir-130-P4a chr11: 88129785-88129844 [+] UCSC Ensembl

Seed

AGUGCAA

Precursor
(pre-Mir +30nt flank)

UACCCCUUGAGACUGACUGGCUUGCUGGACACUCUUUCCCUGUUGCACUACUGUGGGCCUCUGGGAAGCAGUGCAAUGAUGAAAGGGCAUCCGUCAGGCCAGCUAAGGAACCUGAAGUAC

Get precursor sequence

Structure

        10          20        30        40        50         
UACCCCUUGAGACUGAC--|      C    CA       CC         A  GUGGGC 
                   UGGCUUG UGGA  CUCUUUC  UGUUGCACU CU      C
                   ACCGGAC GCCU  GGGAAAG  GUAACGUGA GA      U
CAUGAAGUCCAAGGAAUCG^      U    AC       UA         C  AGGGUC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-130-P4a_5p*

mirBase accession

MIMAT0017122

Sequence

0- ACUCUUUCCCUGUUGCACUACU -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-130b-5p
miRDB: MIMAT0017122

Mature sequence

Rno-Mir-130-P4a_3p

mirBase accession

MIMAT0000837

Sequence

38- CAGUGCAAUGAUGAAAGGGCAU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000837
TargetScanVert: rno-miR-130b-3p
miRDB: MIMAT0000837