MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-130-P4a

Family name MIR-130 (all species)
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-130-P1c  Laf-Mir-130-P2a  Laf-Mir-130-P2b  Laf-Mir-130-P3b 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010097.1: 764361-764420 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)		 Mir-130-P2a GL010097.1: 764034-764093 [+] UCSC Ensembl
Mir-130-P4a GL010097.1: 764361-764420 [+] UCSC Ensembl
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
CCAGGAGAGGCGCUGGCUGGCCUGCCCAACACUCUUUCCCUGUUGCACUACUGUGGGCUGCUAGGAAGCAGUGCAAUGAUGAAAGGGCAUUGGUCAGGCCCAACCUGCCACCCACAGCAC
Get precursor sequence
Structure
        10          20        30        40        50         
CCAGGAGAGGCGCUGGCU--|     C    CA       CC         A  GUGGGC 
                    GGCCUG CCAA  CUCUUUC  UGUUGCACU CU      U
                    CCGGAC GGUU  GGGAAAG  GUAACGUGA GA      G
CACGACACCCACCGUCCAAC^     U    AC       UA         C  AGGAUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Wh
Star sequence

Laf-Mir-130-P4a_5p*
mirBase accessionNone
Sequence 
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
Mature sequence

Laf-Mir-130-P4a_3p
mirBase accessionNone
Sequence 
38- CAGUGCAAUGAUGAAAGGGCAU -60
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