| MirGeneDB ID | Spt-Mir-130-P4a |
|---|---|
| Family name | MIR-130 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-130-P1a Spt-Mir-130-P1b Spt-Mir-130-P1c Spt-Mir-130-P2a Spt-Mir-130-P2b Spt-Mir-130-P3a |
| Orthologues | Aca-Mir-130-P4a Bta-Mir-130-P4a Cfa-Mir-130-P4a Cja-Mir-130-P4a Cmi-Mir-130-P4a Cpi-Mir-130-P4a Cpo-Mir-130-P4a Dno-Mir-130-P4a Dre-Mir-130-P4a1 Eca-Mir-130-P4a Ete-Mir-130-P4a Gga-Mir-130-P4a Gja-Mir-130-P4a Hsa-Mir-130-P4a Laf-Mir-130-P4a Lch-Mir-130-P4a Loc-Mir-130-P4a Mal-Mir-130-P4a1 Mdo-Mir-130-P4a Mml-Mir-130-P4a Mmr-Mir-130-P4a Mmu-Mir-130-P4a Mun-Mir-130-P4a Ocu-Mir-130-P4a Pab-Mir-130-P4a Pbv-Mir-130-P4a Rno-Mir-130-P4a Sha-Mir-130-P4a Sto-Mir-130-P4a Tgu-Mir-130-P4a Xla-Mir-130-P4a3 Xla-Mir-130-P4a4 Xtr-Mir-130-P4a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011180.1: 5877745-5877805 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-130-P4a) |
Mir-130-P1a
QEPC01011180.1: 5867719-5867777 [+]
UCSC
Ensembl
Mir-130-P2a QEPC01011180.1: 5869034-5869096 [+] UCSC Ensembl Mir-130-P3a QEPC01011180.1: 5876074-5876137 [+] UCSC Ensembl Mir-130-P4a QEPC01011180.1: 5877745-5877805 [+] UCSC Ensembl |
| Seed | AGUGCAA |
| Precursor (pre-Mir +30nt flank) |
UGCUGAGGAGCACCGGACAGGUUGGCUGGCACUCUUUCCCUGUUGCACUACUGUCAAACUUGCAGCUAGCAGUGCAAUAAUGAAAGGGCGUCAGUCUGCUGGGGAGCGGCAAGAGCAAGGGGet precursor sequence |
| Structure | 10 20 30 40 50 UGCUGAGGAGCACCGGA---| GUU A CC A GUCAAAC CAG GGCUGGC CUCUUUC UGUUGCACU CU \ GUC CUGACUG GGGAAAG AUAACGUGA GA U GGGAACGAGAACGGCGAGGG^ GU- C UA C UCGACGU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-130-P4a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACUCUUUCCCUGUUGCACUACU -22
Get sequence
|
| Mature sequence | Spt-Mir-130-P4a_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- CAGUGCAAUAAUGAAAGGGCGU -61
Get sequence
|
