Mir-196-P3

MirGeneDB ID

Cli-Mir-196-P3

Family name

MIR-196 (all species)

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-196-1

Paralogues

Cli-Mir-196-P1 Cli-Mir-196-P4

Orthologues

Aca-Mir-196-P3 Ami-Mir-196-P3 Bta-Mir-196-P3 Cfa-Mir-196-P3 Cin-Mir-196 Cja-Mir-196-P3 Cmi-Mir-196-P3 Cpi-Mir-196-P3 Cpo-Mir-196-P3 Dno-Mir-196-P3 Dre-Mir-196-P3a Eca-Mir-196-P3 Gga-Mir-196-P3 Gja-Mir-196-P3 Hsa-Mir-196-P3 Laf-Mir-196-P3 Lch-Mir-196-P3 Loc-Mir-196-P3 Mal-Mir-196-P3a Mdo-Mir-196-P3 Mml-Mir-196-P3 Mmr-Mir-196-P3 Mmu-Mir-196-P3 Neu-Mir-196-P3 Ocu-Mir-196-P3 Pab-Mir-196-P3 Pbv-Mir-196-P3 Pma-Mir-196-o3 Rno-Mir-196-P3 Sha-Mir-196-P3 Spt-Mir-196-P3 Sto-Mir-196-P3 Tni-Mir-196-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(colLiv2)

scaffold265: 1508615-1508674 [+]

Seed

AGGUAGU

Precursor
(pre-Mir +30nt flank)

CCAAGGCUGAACUAGAACUGCUCUGUGAAUUAGGUAGUUUCAUGUUGUUGGGCUUUUAAUUUUAAACACAAGAACAUCAAACUACCUGAUUUACUCCAGUUAUCCUCCUCGCUCUGGUUU

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Structure

        10            20        30        40        50         
CCAAGGCUGAACUAGAA----|  CUCU                C     G   GGCUUUUA 
                     CUG    GUGAAUUAGGUAGUUU AUGUU UUG        A
                     GAC    CAUUUAGUCCAUCAAA UACAA AAC        U
UUUGGUCUCGCUCCUCCUAUU^  CU--                C     G   ACAAAUUU 
.       110       100          90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Li	Mi	Ov	Pe	Te	To

Mature sequence

Cli-Mir-196-P3_5p

mirBase accession

MIMAT0038570

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

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Star sequence

Cli-Mir-196-P3_3p*

mirBase accession

MIMAT0038571

Sequence

38- CAAGAACAUCAAACUACCUGAU -60

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